apramycin

AlkaPlorer ID: AK013958

Synonym: 'Apramycin', 'apramycin'

IUPAC Name: (2R,3R,4S,5S,6S)-5-amino-2-[[(2R,3S,4R,6S,7R)-7-amino-6-[(1R,2R,3S,4R,6S)-4,6-diamino-2,3-dihydroxycyclohexyl]oxy-4-hydroxy-3-(methylamino)-2,3,4,4a,6,7,8,8a-octahydropyrano[3,2-b]pyran-2-yl]oxy]-6-(hydroxymethyl)oxane-3,4-diol

Structure

SMILES: CN[C@@H]1[C@@H](O[C@H]2O[C@H](CO)[C@@H](N)[C@H](O)[C@H]2O)OC2C[C@@H](N)[C@@H](O[C@H]3[C@H](O)[C@@H](O)[C@H](N)C[C@@H]3N)OC2[C@@H]1O

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InChI: InChI=1S/C21H41N5O11/c1-26-11-14(30)18-8(33-20(11)37-21-16(32)13(29)10(25)9(4-27)34-21)3-7(24)19(36-18)35-17-6(23)2-5(22)12(28)15(17)31/h5-21,26-32H,2-4,22-25H2,1H3/t5-,6+,7-,8?,9-,10-,11+,12+,13+,14-,15-,16-,17-,18?,19+,20-,21-/m1/s1

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InChIKey: XZNUGFQTQHRASN-PSDDYZKFSA-N

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Reference

PubChem CID: 57397142

NPASS: NPC486416

Source

Species Genus Family Order Class Phylum Kingdom Domain

Properties Information

Molecule Weight: 539.5830000000003

TPSA: 283.64000000000004

MolLogP: -6.949300000000007

Number of H-Donors: 11

Number of H-Acceptors: 16

RingCount: 4

Activities Information

Organism Target Name Standard Type Standard Value Standard Units doi
Bacillus subtilis Bacillus subtilis IZ 10.0 mm 10.1021/acs.jnatprod.6b00478
Bacteria Bacterial 70S ribosome IC50 0.06 ug.mL-1 10.1039/C4MD00119B
Escherichia coli Escherichia coli IZ 7.0 mm 10.1021/acs.jnatprod.6b00478
Escherichia coli Escherichia coli MIC 1.0 ug.mL-1 10.1128/aac.00926-07
Escherichia coli Escherichia coli MIC 2.0 ug.mL-1 10.1128/aac.00926-07
Escherichia coli Escherichia coli MIC 2.0 ug.mL-1 10.1128/aac.01345-06
Escherichia coli Escherichia coli MIC 3.9 ug.mL-1 10.1128/aac.00926-07
Escherichia coli Escherichia coli MIC 4.0 ug.mL-1 10.1039/C4MD00119B
Escherichia coli Escherichia coli MIC 8.0 ug.mL-1 10.1039/C4MD00119B
Escherichia coli Escherichia coli MIC 16.0 ug.mL-1 10.1039/C4MD00119B
Escherichia coli Escherichia coli MIC 256.0 ug.mL-1 10.1128/aac.00926-07
Escherichia coli Escherichia coli MIC 1000.0 ug.mL-1 10.1128/aac.00926-07
Homo sapiens 80S Ribosome IC50 58.03 ug.mL-1 10.1039/C4MD00119B
Homo sapiens Telomerase reverse transcriptase Inhibition 30.0 % 10.1016/j.bmcl.2004.04.055
Homo sapiens Telomerase reverse transcriptase Inhibition nan % 10.1016/j.bmcl.2004.04.055
Nocardia farcinica Nocardia farcinica MIC 32.0 ug.mL-1 10.1128/aac.00021-10
Nocardia farcinica Nocardia farcinica MIC 64.0 ug.mL-1 10.1128/aac.00021-10
Nocardia farcinica Nocardia farcinica MIC 256.0 ug.mL-1 10.1128/aac.00021-10
Nocardia farcinica Nocardia farcinica MIC 1024.0 ug.mL-1 10.1128/aac.00021-10
Pseudomonas aeruginosa Pseudomonas aeruginosa IZ 15.0 mm 10.1021/acs.jnatprod.6b00478
Pseudomonas aeruginosa Pseudomonas aeruginosa MIC 32.0 ug.mL-1 10.1128/aac.01345-06
Staphylococcus aureus Staphylococcus aureus IZ 7.0 mm 10.1021/acs.jnatprod.6b00478
Staphylococcus aureus Staphylococcus aureus MIC 1.0 ug.mL-1 10.1128/aac.01091-09
Staphylococcus aureus Staphylococcus aureus MIC 1.0 ug.mL-1 10.1128/aac.01124-10
Staphylococcus aureus Staphylococcus aureus MIC 4.0 ug.mL-1 10.1128/aac.01091-09
Staphylococcus aureus Staphylococcus aureus MIC 8.0 ug.mL-1 10.1039/C4MD00119B
Staphylococcus aureus Staphylococcus aureus MIC 16.0 ug.mL-1 10.1039/C4MD00119B
Staphylococcus aureus Staphylococcus aureus MIC 128.0 ug.mL-1 10.1128/aac.01124-10
None ADMET C50 0.87 uM 10.1021/jm00385a015
None ADMET Kill at C50 95.0 % 10.1021/jm00385a015
None ADMET LD90 0.67 uM 10.1021/jm00385a015
None ADMET Uptake at C50 4.0 None 10.1021/jm00385a015
None Nucleic Acid Inhibition 10.0 % 10.1016/j.bmcl.2011.12.103
None Nucleic Acid Kd 60.0 nM 10.1021/jm9000659
None Ribosome IC50 23.77 ug.mL-1 10.1039/C4MD00119B
None Unchecked Activity 72.0 % 10.1016/j.bmc.2015.07.062
None Unchecked IC50 5.0 ug.mL-1 10.1039/C4MD00119B
None Unchecked IC50 26.06 ug.mL-1 10.1039/C4MD00119B
None Unchecked IC50 31.21 ug.mL-1 10.1039/C4MD00119B
None Unchecked IC50 49.17 ug.mL-1 10.1039/C4MD00119B
None Unchecked IC50 128.89 ug.mL-1 10.1039/C4MD00119B
None Unchecked IC50 162000.0 nM 10.1016/j.bmc.2015.07.062
None Unchecked IC50 170000.0 nM 10.1016/j.bmc.2015.07.062
None Unchecked IC50 335000.0 nM 10.1016/j.bmc.2015.07.062
None Unchecked IC50 nan None 10.1016/j.bmc.2015.07.062
None Unchecked Inhibition 0.0 % 10.1016/j.bmcl.2004.04.055
None Unchecked Inhibition 60.0 % 10.1016/j.bmc.2015.07.062
None Unchecked Kd 1030.0 nM 10.1016/j.bmc.2015.07.062
None Unchecked Kd 2990.0 nM 10.1016/j.bmc.2015.07.062
None Unchecked Kd 4200.0 nM 10.1016/j.bmc.2015.07.062
None Unchecked Kd 6550.0 nM 10.1016/j.bmc.2015.07.062
None Unchecked Kd 9050.0 nM 10.1016/j.bmc.2015.07.062
None Unchecked Ratio 2.2 None 10.1016/j.bmc.2015.07.062
None Unchecked Ratio 3.0 None 10.1016/j.bmc.2015.07.062

Metabolism Information