Targeted Genome Mining—From Compound Discovery to Biosynthetic Pathway Elucidation

Microorganisms
2020.0

Abstract

<jats:p>Natural products are an important source of novel investigational compounds in drug discovery. Especially in the field of antibiotics, Actinobacteria have been proven to be a reliable source for lead structures. The discovery of these natural products with activity- and structure-guided screenings has been impeded by the constant rediscovery of previously identified compounds. Additionally, a large discrepancy between produced natural products and biosynthetic potential in Actinobacteria, including representatives of the order Pseudonocardiales, has been revealed using genome sequencing. To turn this genomic potential into novel natural products, we used an approach including the in-silico pre-selection of unique biosynthetic gene clusters followed by their systematic heterologous expression. As a proof of concept, fifteen Saccharothrixespanaensis genomic library clones covering predicted biosynthetic gene clusters were chosen for expression in two heterologous hosts, Streptomyceslividans and Streptomycesalbus. As a result, two novel natural products, an unusual angucyclinone pentangumycin and a new type II polyketide synthase shunt product SEK90, were identified. After purification and structure elucidation, the biosynthetic pathways leading to the formation of pentangumycin and SEK90 were deduced using mutational analysis of the biosynthetic gene cluster and feeding experiments with 13C-labelled precursors.

Knowledge Graph

Similar Paper

Targeted Genome Mining—From Compound Discovery to Biosynthetic Pathway Elucidation
Microorganisms 2020.0
Functional Genome Mining for Metabolites Encoded by Large Gene Clusters through Heterologous Expression of a Whole-Genome Bacterial Artificial Chromosome Library in Streptomyces spp
Applied and Environmental Microbiology 2016.0
Discovery of <i>C</i>-Glycosylpyranonaphthoquinones in <i>Streptomyces</i> sp. MBT76 by a Combined NMR-Based Metabolomics and Bioinformatics Workflow
Journal of Natural Products 2017.0
Discovery of <i>C</i>-Glycosylpyranonaphthoquinones in <i>Streptomyces</i> sp. MBT76 by a Combined NMR-Based Metabolomics and Bioinformatics Workflow
Journal of Natural Products 2017.0
Activating a Cryptic Ansamycin Biosynthetic Gene Cluster To Produce Three New Naphthalenic Octaketide Ansamycins with <i>n</i>-Pentyl and <i>n</i>-Butyl Side Chains
Organic Letters 2015.0
Activating a Cryptic Ansamycin Biosynthetic Gene Cluster To Produce Three New Naphthalenic Octaketide Ansamycins with <i>n</i>-Pentyl and <i>n</i>-Butyl Side Chains
Organic Letters 2015.0
Discovery of the actinoplanic acid pathway in Streptomyces rapamycinicus reveals a genetically conserved synergism with rapamycin
Journal of Biological Chemistry 2018.0
Discovery of the actinoplanic acid pathway in Streptomyces rapamycinicus reveals a genetically conserved synergism with rapamycin
Journal of Biological Chemistry 2018.0
Isolation of a new antibacterial peptide actinokineosin from<i>Actinokineospora spheciospongiae</i>based on genome mining
Letters in Applied Microbiology 2017.0
Heterologous expression of natural product biosynthetic gene clusters in <i>Streptomyces coelicolor</i>: from genome mining to manipulation of biosynthetic pathways
Journal of Industrial Microbiology and Biotechnology 2014.0