Steady-State Kinetic Mechanism and Reductive Half-Reaction of d-Arginine Dehydrogenase from Pseudomonas aeruginosa

Biochemistry
2010.0

Abstract

D-arginine dehydrogenase from Pseudomonas aeruginosa catalyzes the oxidation of D-arginine to iminoarginine, which is hydrolyzed in solution to ketoarginine and ammonia. In the present study, we have genetically engineered an untagged form of the enzyme that was purified to high levels and characterized in its kinetic properties. The enzyme is a true dehydrogenase that does not react with molecular oxygen. Steady-state kinetic studies with D-arginine or D-histidine as substrate and PMS as the electron acceptor established a ping-pong bi-bi kinetic mechanism. With the fast substrate D-arginine a dead-end complex of the reduced enzyme and the substrate occurs at high concentrations of D-arginine yielding substrate inhibition, while the overall turnover is partially limited by the release of the iminoarginine product. With the slow substrate D-histidine the initial Michaelis complex undergoes an isomerization involving multiple conformations that are not all equally catalytically competent for the subsequent oxidation reaction, while the overall turnover is at least partially limited by flavin reduction. The kinetic data are interpreted in view of the high-resolution crystal structures of the iminoarginine--and iminohistidine--enzyme complexes.

Knowledge Graph

Similar Paper

Steady-State Kinetic Mechanism and Reductive Half-Reaction of <scp>d</scp>-Arginine Dehydrogenase from <i>Pseudomonas aeruginosa</i>
Biochemistry 2010.0
Purification and kinetic analysis of the two recombinant arogenate dehydrogenase isoforms of <i>Arabidopsis thaliana</i>
European Journal of Biochemistry 2002.0
Formation of the Michaelis complex without involvement of the prosthetic group dehydroalanine of histidine ammonialyase
Bioorganic &amp; Medicinal Chemistry Letters 1997.0
Reengineering of the feedback-inhibition enzyme <i>N</i>-acetyl-<scp>l</scp>-glutamate kinase to enhance <scp>l</scp>-arginine production in <i>Corynebacterium crenatum</i>
Journal of Industrial Microbiology and Biotechnology 2017.0
Pyridoacridine alkaloids from deep-water marine sponges of the family Pachastrellidae: structure revision of dercitin and related compounds and correlation with the kuanoniamines
The Journal of Organic Chemistry 1992.0
Factors That Affect Oxygen Activation and Coupling of the Two Redox Cycles in the Aromatization Reaction Catalyzed by NikD, an Unusual Amino Acid Oxidase
Biochemistry 2009.0
Conformationally constrained diketopimelic acid analogues as inhibitors of dihydrodipicolinate synthase
Bioorganic &amp; Medicinal Chemistry Letters 2008.0
<i>Streptomyces wadayamensis</i> MppP is a PLP-Dependent Oxidase, Not an Oxygenase
Biochemistry 2018.0
Structural and mechanistic studies on N2-(2-carboxyethyl)arginine synthase
Biochemical and Biophysical Research Communications 2009.0
Biosynthesis of Nanaomycin. II. Purification and Properties of Nanaomycin D Reductase Involved in the Formation of Nanaomycin A from Nanaomycin D1
The Journal of Biochemistry 1981.0