Structural Basis for E. coli Penicillin Binding Protein (PBP) 2 Inhibition, a Platform for Drug Design

Journal of Medicinal Chemistry
2019.0

Abstract

Penicillin-binding proteins (PBPs) are the targets of the β-lactams, the most successful class of antibiotics ever developed against bacterial infections. Unfortunately, the worldwide and rapid spread of large spectrum β-lactam resistance genes such as carbapenemases is detrimental to the use of antibiotics in this class. New potent PBP inhibitors are needed, especially compounds that resist β-lactamase hydrolysis. Here we describe the structure of the E. coli PBP2 in its Apo form and upon its reaction with 2 diazabicyclo derivatives, avibactam and CPD4, a new potent PBP2 inhibitor. Examination of these structures shows that unlike avibactam, CPD4 can perform a hydrophobic stacking on Trp370 in the active site of E. coli PBP2. This result, together with sequence analysis, homology modeling, and SAR, allows us to propose CPD4 as potential starting scaffold to develop molecules active against a broad range of bacterial species at the top of the WHO priority list.

Knowledge Graph

Similar Paper

Structural Basis for E. coli Penicillin Binding Protein (PBP) 2 Inhibition, a Platform for Drug Design
Journal of Medicinal Chemistry 2019.0
4-Quinolones as Noncovalent Inhibitors of High Molecular Mass Penicillin-Binding Proteins
ACS Medicinal Chemistry Letters 2012.0
Discovery of New Inhibitors of Resistant Streptococcus pneumoniae Penicillin Binding Protein (PBP) 2x by Structure-Based Virtual Screening
Journal of Medicinal Chemistry 2009.0
Structural and mechanistic basis of penicillin-binding protein inhibition by lactivicins
Nature Chemical Biology 2007.0
Synthesis, hydrolysis rates, supercomputer modeling, and antibacterial activity of bicyclic tetrahydropyridazinones
Journal of Medicinal Chemistry 1991.0
Design, synthesis, and structure–activity relationship study of 5-amido-1-(2,4-dinitrophenyl)-1H-4-pyrazolecarbonitrils as DD-carboxypeptidase/penicillin-binding protein inhibitors with Gram-positive antibacterial activity
Medicinal Chemistry Research 2010.0
Penicillin binding protein 2a: An overview and a medicinal chemistry perspective
European Journal of Medicinal Chemistry 2020.0
A γ-Lactam Siderophore Antibiotic Effective against Multidrug-Resistant Gram-Negative Bacilli
Journal of Medicinal Chemistry 2020.0
Neutral β-Lactams Inactivate High Molecular Mass Penicillin-Binding Proteins of Class B1, Including PBP2a of MRSA
ACS Medicinal Chemistry Letters 2014.0
Design and synthesis of bridged $gamma;-lactams as analogues of $beta;-lactam antibiotics
Bioorganic & Medicinal Chemistry Letters 2004.0