Isoniazid-naphthoquinone hybrids were synthesized and evaluated against a susceptible (H<sub>37</sub>Rv) strain and two isoniazid-resistant strains (INH<sub>R1</sub> and INH<sub>R2</sub>) of Mycobacterium tuberculosis. The antimycobacterial activity of the derivatives was determined based on the resazurin microtiter assay and their cytotoxicity in adhered mouse monocyte macrophage J774.A1 cells (ATCC TIB-67). Of the twenty-two compounds evaluated against the three strains of M. tuberculosis, twenty-one presented some activity against the H<sub>37</sub>Rv and INH<sub>R1</sub> (katG S315T) or INH<sub>R2</sub> (inhA C(-5)T) strains. Compounds 1a, 2a, and 8a were effective against the INH<sub>R1</sub> strain, and compounds 1a, 1b, 2a, 3a, 5a, 5b and 8a were effective against the INH<sub>R2</sub> strain, with MICs in the range of 3.12-6.25 µg/mL. Compounds 1b and 5b were the most active against H<sub>37</sub>Rv, with MIC of 0.78 µg/mL. Based on the selectivity index, 1b and 5b can be considered safe as a drug candidate compounds. These results demonstrate that quinoidal compounds can be used as promising scaffolds for the development of new anti-TB drugs and hybrids with activity against M. tuberculosis-susceptible and INH-resistant strains.