Looking toward the Rim of the Active Site Cavity of Druggable Human Carbonic Anhydrase Isoforms

ACS Medicinal Chemistry Letters
2020.0

Abstract

We report the synthesis and biochemical evaluation of a series of substituted 4-(4-aroylpiperazine-1-carbonyl)benzenesulfonamides (<b>5a</b>-<b>s</b>) developed as inhibitors of druggable carbonic anhydrase (CA) isoforms, as tools for the identification of new therapeutics. X-ray crystallography confirmed that this class of benzenesulfonamides binds CAs through the canonical anchoring of the benzenesulfonamide moiety to the metal ion and a <i>tail-mediated</i> recognition of the middle/top area of the active site cavity. Compound <b>5e</b> (R = 2-Cl) demonstrated relevant selectivity toward brain-expressed hCA VII. The best balancing in binding affinity and selectivity toward tumor-expressed hCA IX/hCA XII over ubiquitous hCA I/hCA II was found for inhibitor <b>5o</b> (R = 3-NO<sub>2</sub>). Notably <b>5b</b> (R = 2-F) proved to be the most efficacious inhibitor of hCA XII for which computational studies elucidated the CA recognition process.

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