Tuberculosis, caused by <i>Mycobacterium tuberculosis</i>, claims ∼1.5 million lives annually. Effective chemotherapy is essential to control TB, however the emergence of drug-resistant strains of TB have seriously threatened global attempts to control and eradicate this deadly pathogen. Trehalose recycling <i>via</i> the LpqY-SugABC importer is essential for the virulence and survival of <i>Mtb</i> and inhibiting or hijacking this transport system is an attractive approach for the development of novel anti-tubercular and diagnostic agents. Therefore, we interrogated the drug-like compounds in the open-source Medicines for Malaria Pathogen Box and successfully identified seven compounds from the TB, kinetoplastids and reference compound disease sets that recognise LpqY. The molecules have diverse chemical scaffolds, are not specific trehalose analogues, and may be used as novel templates to facilitate the development of therapeutics that kill <i>Mtb</i> with a novel mechanism of action <i>via</i> the mycobacterial trehalose LpqY-SugABC transport system.